Expertise
- Aquaculture Genomics
- Muscle biology
Education
- Ph.D. in Genetics- West Virginia University, 2004
- M.S. in Zoology- Zagazig University, Egypt, 1995
Lab Information:
1-Omics approaches to study/enhance muscle growth
I am interested in studying the complex interactions between various components of the muscle as a biological system and how these interactions work under various biological and environmental conditions to give rise to variations in phenotypes. I am particularly interested in exploring the causative connections between genotypic and phenotypic variation in muscle under degenerative/regenerative conditions. I use various genome-wide omics approaches, including; transcriptomics, post-transcriptomics, genomics, epigenomics, CRISPR, and proteomics, to obtain, integrate and analyze complex data from various experimental sources. I use bioinformatics to simultaneously analyze complex biological networks and integrate rigorous data from high-throughput functional omics experiments. The ultimate goal of my research is to maximize the synthesis of high-quality muscle fibers.
2-Omics approaches to enhance aquaculture production
One major constraint to increasing the production efficiency of the aquaculture industry is the lack of genetically improved strains of fish for aquaculture. The majority of aquaculture production is based on genetically unimproved stocks. The benefits of selective breeding and domestication in aquaculture were only appreciated recently. There is limited genetic information on traits that could enhance production efficiency and yield a better-quality fish. Identification and characterization of the genetics and fish physiology affecting aquaculture production traits will facilitate the development of genetically improved strains and science-based recommendations to farmers and hatchery managers to increase aquaculture production efficiency. Aquaculture biotechnology can help in developing germplasm, and farm management guidelines for improved growth, stress tolerance, fillet quality, disease resistance, and feed conversion efficiency as well as control of reproduction cycle and age at sexual maturation.
Professional Positions Held:
- Chair of the 2017 USDA National Animal Genome Research Program (NRSP8) http://www.animalgenome.org/community/NRSP-8/2017/leadership.php
- Co-chair of the NRSP8 grant proposal writing committee 2017-2018 https://www.animalgenome.org/community/NRSP-8/2019-2023.proposal/
- Aquaculture Co-Coordinator USDA NRSP-8 National Animal Genome Program
- Associate Editor of the BMC Genomics Journal.
- Editor of the International Journal of Genomics (IJG).
- Associate Editor of the Marine Biotechnology Journal.
Projects:
Integrated Genomics and Metagenomics Predictions and Modulation of the Gut Microbiota-Muscel Axis to Improve Fillet Yield in Rainbow Trout- Agency: USDA/AFRI
Whole-Genome Analyses/Selection To Increase Muscle Yield And Reduce Fillet Downgrading In Rainbow Trout- Agency: USDA/AFRI
High-Quality Reference Assembly And Annotation Of The Rainbow Trout Genome- Agency: USDA/AFRI
Bringing Next-Generation Breeding Into Aquaculture- Agency: USAID/NAS
SNP Markers For Muscle, Growth, And Fillet Quality Traits In Rainbow Trout- Agency: USDA/AFRI
Generation of a 50K SNP Chip for Genomic Analysis in Rainbow Trout- Agency: USDA/AFRI
Rainbow Trout Genome Project- Agency: USDA/ARS
Molecular Biomarkers for Muscle Atrophy and Fillet Quality in Rainbow Trout- Agency: USDA
